Bioinformatics Data Analysis Pipeline- ChIP-Seq
Bioinformatics Data Analysis Pipeline- ChIP-Seq
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DeepTools
Tools for exploring deep sequencing data especially ChIPseq.
Reference: PMID: 27079975
Contact: Qin Ma
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MACS2
Transcription factor peak caller for CHIPseq and any other type of DNA enrichment.
Reference: PMID: 18798982
Contact: Qin Ma
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ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data.
Reference: PMID: 20459804
Contact: Qin Ma
- DiffBind
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HOMER
Software for motif discovery and next-gen sequencing analysis.
Reference: PMID: 20513432
Contact: Qin Ma