Bioinformatics Data Analysis Pipeline- Other Bioinformatics Analyses
Bioinformatics Data Analysis Pipeline- Other Bioinformatics Analyses
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miRDeep2
Discovers active known or novel miRNAs from deep sequencing data.
Reference: PMID: 21911355
Contact: Qin Ma
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Juicer
A platform for analyzing kilobase resolution Hi-C data. In this distribution, we include the pipeline for generating Hi-C maps from fastq raw data files and command line tools for feature annotation on the Hi-C maps.
Reference: PMID: 27467249
Contact: Qin Ma
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QIIME2
Next-generation microbiome bioinformatics platform that is extensible, free and open source.
Reference: PMID: 32343490
Contact: Qin Ma
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Transcriptome Analysis Console
QC, normalization, and differential expression of affymetrix microarray data.
Contact: Qin Ma
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XCMS
An R package which provides a framework for processing LC/MS spectral data.
Reference: PMID: 16448051
Contact: Qin Ma
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CAMERA
An R package which provides collection of annotation related methods for mass spectrometry data.
Reference: PMID: 22111785
Contact: Qin Ma
- Parse Biosciences Pipeline