Bioinformatics Data Analysis Pipeline- RNA-Seq
Bioinformatics Data Analysis Pipeline- RNA-Seq
- EdgeR
- DESeq2
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Limma
Differential expression analysis using bulk RNA-seq and microarray data.
Reference: PMID: 25605792
Contact: Qin Ma
- RSeQC
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JunctionSeq
Bioconductor package for detection and visualization of differential usage of exons and splice junctions in High-Throughput, Next-Generation RNA-Seq datasets.
Reference: PMID: 27257077
Contact: Qin Ma
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CIBERSORT
A deconvolution-based method thats estimates each immune cell type's relative proportion from a gene expression profile (GEP).
Reference: PMID: 29344893
Contact: Qin Ma